[SW-1107] NullPointerException at water.H2ONode.openChan(H2ONode.java:417) after upgrade to H2O 3.22.0.3 - JIRA

Details

Type: Bug
Status: Resolved
Priority: Critical
Resolution: Fixed
Affects Version/s: 2.3.19
Fix Version/s: 2.1.45, 2.2.31, 2.3.20, 2.4.2
Component/s: None
Labels:
None

CustomerVisible:
Yes
Sprint:

Description

NPE happens here
https://github.com/h2oai/h2o-3/blob/02b183e7d6d7c83301486ca2fd0ce15b61294379/h2o-core/src/main/java/water/H2ONode.java#L417

when calling
hc.as_h2o_frame() (from Sparkling Water 2.3.19, connected to h2o external backend cluster).

Same code worked fine before upgrade (from SW 2.3.13).

See full exception here -


Py4JJavaErrorTraceback (most recent call last)
<ipython-input-52-9806e38ce736> in <module>()
     79     print datetime.now().strftime('%Y%m%d %H:%M:%S') + "-Converting to H2O Frame..."
     80 
---> 81     modeling = hc.as_h2o_frame(modeling_data,framename=hdfs_file_name)
     82     print datetime.now().strftime('%Y%m%d %H:%M:%S') + "-Complete"
     83 

/opt/cloudera/parcels/Anaconda/lib/python2.7/site-packages/pysparkling/context.pyc in as_h2o_frame(self, dataframe, framename, full_cols)
    253         """
    254         if isinstance(dataframe, DataFrame):
--> 255             return fc._as_h2o_frame_from_dataframe(self, dataframe, framename, full_cols)
    256         elif isinstance(dataframe, RDD) and dataframe.isEmpty():
    257             schema = StructType([])

/opt/cloudera/parcels/Anaconda/lib/python2.7/site-packages/pysparkling/conversions.pyc in _as_h2o_frame_from_dataframe(h2oContext, dataframe, frame_name, full_cols)
     40     @staticmethod
     41     def _as_h2o_frame_from_dataframe(h2oContext, dataframe, frame_name, full_cols=100):
---> 42         j_h2o_frame = h2oContext._jhc.asH2OFrame(dataframe._jdf, frame_name)
     43         j_h2o_frame_key = j_h2o_frame.key()
     44         return H2OFrame.from_java_h2o_frame(j_h2o_frame,j_h2o_frame_key, full_cols)

/opt/cloudera/parcels/SPARK2-2.3.0.cloudera4-1.cdh5.13.3.p0.611179/lib/spark2/python/lib/py4j-0.10.7-src.zip/py4j/java_gateway.py in __call__(self, *args)
   1255         answer = self.gateway_client.send_command(command)
   1256         return_value = get_return_value(
-> 1257             answer, self.gateway_client, self.target_id, self.name)
   1258 
   1259         for temp_arg in temp_args:

/opt/cloudera/parcels/SPARK2-2.3.0.cloudera4-1.cdh5.13.3.p0.611179/lib/spark2/python/lib/pyspark.zip/pyspark/sql/utils.py in deco(*a, **kw)
     61     def deco(*a, **kw):
     62         try:
---> 63             return f(*a, **kw)
     64         except py4j.protocol.Py4JJavaError as e:
     65             s = e.java_exception.toString()

/opt/cloudera/parcels/SPARK2-2.3.0.cloudera4-1.cdh5.13.3.p0.611179/lib/spark2/python/lib/py4j-0.10.7-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
    326                 raise Py4JJavaError(
    327                     "An error occurred while calling {0}{1}{2}.\n".
--> 328                     format(target_id, ".", name), value)
    329             else:
    330                 raise Py4JError(

Py4JJavaError: An error occurred while calling o605.asH2OFrame.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 2 in stage 85.0 failed 4 times, most recent failure: Lost task 2.3 in stage 85.0 (TID 12836, pc1udatahad15.abacus-us.com, executor 24): java.lang.NullPointerException
              at water.H2ONode.openChan(H2ONode.java:417)
              at water.H2ONode.openChan(H2ONode.java:428)
              at water.ExternalFrameUtils.getConnection(ExternalFrameUtils.java:50)
              at org.apache.spark.h2o.backends.external.ExternalWriteConverterCtx.<init>(ExternalWriteConverterCtx.scala:31)
              at org.apache.spark.h2o.converters.WriteConverterCtxUtils$$anonfun$create$1.apply(WriteConverterCtxUtils.scala:42)
              at org.apache.spark.h2o.converters.WriteConverterCtxUtils$$anonfun$create$1.apply(WriteConverterCtxUtils.scala:42)
              at scala.Option.map(Option.scala:146)
              at org.apache.spark.h2o.converters.WriteConverterCtxUtils$.create(WriteConverterCtxUtils.scala:42)
              at org.apache.spark.h2o.converters.SparkDataFrameConverter$.org$apache$spark$h2o$converters$SparkDataFrameConverter$$perSQLPartition(SparkDataFrameConverter.scala:102)
              at org.apache.spark.h2o.converters.SparkDataFrameConverter$$anonfun$toH2OFrame$2$$anonfun$apply$1.apply(SparkDataFrameConverter.scala:82)
              at org.apache.spark.h2o.converters.SparkDataFrameConverter$$anonfun$toH2OFrame$2$$anonfun$apply$1.apply(SparkDataFrameConverter.scala:82)
              at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
              at org.apache.spark.scheduler.Task.run(Task.scala:109)
              at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:381)
              at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
              at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
              at java.lang.Thread.run(Thread.java:748)

Driver stacktrace:
              at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1651)
              at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1639)
              at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1638)
              at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
              at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
              at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1638)
              at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
              at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
              at scala.Option.foreach(Option.scala:257)
              at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831)
              at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1872)
              at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1821)
              at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1810)
              at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
              at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642)
              at org.apache.spark.SparkContext.runJob(SparkContext.scala:2034)
              at org.apache.spark.SparkContext.runJob(SparkContext.scala:2055)
              at org.apache.spark.SparkContext.runJob(SparkContext.scala:2087)
              at org.apache.spark.h2o.converters.WriteConverterCtxUtils$.convert(WriteConverterCtxUtils.scala:87)
              at org.apache.spark.h2o.converters.SparkDataFrameConverter$.toH2OFrame(SparkDataFrameConverter.scala:81)
              at org.apache.spark.h2o.H2OContext$$anonfun$asH2OFrame$2.apply(H2OContext.scala:222)
              at org.apache.spark.h2o.H2OContext$$anonfun$asH2OFrame$2.apply(H2OContext.scala:222)
              at org.apache.spark.h2o.utils.H2OContextUtils$class.withConversionDebugPrints(H2OContextUtils.scala:91)
              at org.apache.spark.h2o.H2OContext.withConversionDebugPrints(H2OContext.scala:66)
              at org.apache.spark.h2o.H2OContext.asH2OFrame(H2OContext.scala:222)
              at org.apache.spark.h2o.H2OContext.asH2OFrame(H2OContext.scala:224)
              at org.apache.spark.h2o.JavaH2OContext.asH2OFrame(JavaH2OContext.java:103)
              at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
              at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
              at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
              at java.lang.reflect.Method.invoke(Method.java:498)
              at org.apache.zeppelin.py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:231)
              at org.apache.zeppelin.py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:381)
              at org.apache.zeppelin.py4j.Gateway.invoke(Gateway.java:290)
              at org.apache.zeppelin.py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:133)
              at org.apache.zeppelin.py4j.commands.CallCommand.execute(CallCommand.java:79)
              at org.apache.zeppelin.py4j.GatewayConnection.run(GatewayConnection.java:209)
              at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NullPointerException
              at water.H2ONode.openChan(H2ONode.java:417)
              at water.H2ONode.openChan(H2ONode.java:428)
              at water.ExternalFrameUtils.getConnection(ExternalFrameUtils.java:50)
              at org.apache.spark.h2o.backends.external.ExternalWriteConverterCtx.<init>(ExternalWriteConverterCtx.scala:31)
              at org.apache.spark.h2o.converters.WriteConverterCtxUtils$$anonfun$create$1.apply(WriteConverterCtxUtils.scala:42)
              at org.apache.spark.h2o.converters.WriteConverterCtxUtils$$anonfun$create$1.apply(WriteConverterCtxUtils.scala:42)
              at scala.Option.map(Option.scala:146)
              at org.apache.spark.h2o.converters.WriteConverterCtxUtils$.create(WriteConverterCtxUtils.scala:42)
              at org.apache.spark.h2o.converters.SparkDataFrameConverter$.org$apache$spark$h2o$converters$SparkDataFrameConverter$$perSQLPartition(SparkDataFrameConverter.scala:102)
              at org.apache.spark.h2o.converters.SparkDataFrameConverter$$anonfun$toH2OFrame$2$$anonfun$apply$1.apply(SparkDataFrameConverter.scala:82)
              at org.apache.spark.h2o.converters.SparkDataFrameConverter$$anonfun$toH2OFrame$2$$anonfun$apply$1.apply(SparkDataFrameConverter.scala:82)
              at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
              at org.apache.spark.scheduler.Task.run(Task.scala:109)
              at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:381)
              at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
              at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
              ... 1 more

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Assignee:

Jakub Hava

Reporter:

Ruslan Dautkhanov

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Dates

Created:

01/Jan/19 7:09 PM

Updated:

06/Jan/19 9:18 AM

Resolved:

06/Jan/19 9:18 AM